PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0966s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 344aa    MW: 38628.4 Da    PI: 6.268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0966s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-191461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++lvd+++++G g+W++ ++   ++R++k+c++rw +yl
  SapurV1A.0966s0040.1.p 14 KGPWTPEEDQKLVDYIEKHGHGSWRALPKLADLNRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding53.46e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+++++E++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0966s0040.1.p  67 RGKFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.939961IPR017930Myb domain
SuperFamilySSF466891.05E-3111108IPR009057Homeodomain-like
SMARTSM007173.1E-151363IPR001005SANT/Myb domain
PfamPF002492.6E-171461IPR001005SANT/Myb domain
CDDcd001671.59E-121661No hitNo description
PROSITE profilePS5129426.68862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2765117IPR009057Homeodomain-like
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002497.6E-1667112IPR001005SANT/Myb domain
CDDcd001674.84E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTPE EDQKLVDYIE KHGHGSWRAL PKLADLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DFFSSLPHLI ALANLRDLME QRPIDDQHAM RLQEDAVQLA KLQYLQYLLQ  180
SAASIHTTNS YGQNGITDME VLNLLNSIPP TKENLLLNSS ELENQASYHF ANTTSQLLHH  240
PSVLSPLSDP QVPFSYQPSL NTEMGQAPFL ATMLSQEGNN PSDSSWVLPS PTPVLATVTR  300
ETNTSNPGDA SSTTSCYGGG TSSYWPELFF EEPTMHEIPS YIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0966s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347263e-40KM034726.1 Jatropha curcas clone JcMYB106 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307380.10.0transcription factor MYB93 isoform X1
SwissprotQ9S9Z21e-124MYB93_ARATH; Transcription factor MYB93
TrEMBLB9H7320.0B9H732_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-104myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]