PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0961s0160.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

BES1

Protein Properties

Length: 505aa MW: 56458.4 Da PI: 7.1054

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0961s0160.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	140.6	1.5e-43	76	200	2	134
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasa 88 g+g+++++kE+E++k+RER+RRai+++++aGLR++G+++lp+raD+n+Vl+AL+reAGw+ve+DGtt+r++ p ++gs+ + SapurV1A.0961s0160.2.p 76 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGDFPLPARADMNDVLAALAREAGWTVEADGTTFRQSPPPS----HTGSFGVR 158 899******************************************************************776555....88999888 PP DUF822 89 spesslqsslkssalaspvesysaspksssfpspssldsislasa..a 134 +es+l k++a++ e + ++++ ++++sp slds+ +++ + SapurV1A.0961s0160.2.p 159 PVESPLL---KNCAVK---ECQPSVLRIDESLSPGSLDSMVISERenS 200 8888866...666655...45667788999999999999999877441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.1E-43	76	213	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.86E-98	236	485	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.0E-109	238	484	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	4.5E-51	263	453	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.7E-26	276	290	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.7E-26	297	315	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.7E-26	319	340	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.7E-26	412	434	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MNTNNSNQDL LINPQQTQIS QPDPYSHLPH PVQPGPSPSP HTQTRRPRGF AATAAAAAAA 60 ASADSTPAVS SPSASGKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GDFPLPARAD 120 MNDVLAALAR EAGWTVEADG TTFRQSPPPS HTGSFGVRPV ESPLLKNCAV KECQPSVLRI 180 DESLSPGSLD SMVISERENS RNEKYTSASP INSVIECLDA DQLIQDVHSG MHQNDFTENS 240 RVPVYVMLAN GFINNCCHLI DPQGVRQELS HMKSLDVDGV VVECWWGVVE AWSPQKYVWS 300 GYRELFNIIQ EFKLKLQVLM AFHEYGGNDS GDVLISLPQW VLEIGKDNQD IFFTDREGRR 360 NTECLSWGID KERVLKGRTG IEVYFDFMRS FRTEFNDLFT EGLITAIEIG LGPSGELKYP 420 SFSERLGWRY PGIGEFQCYD KYSQQNLRKA AKLRGHSFWA KGPDNAGQYN SRPHETGFFC 480 ERGSCSLLVV QDSKPRSRAN SRIL*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MNTNNSNQDL LINPQQTQIS QPDPYSHLPH PVQPGPSPSP HTQTRRPRGF AATAAAAAAA  60
ASADSTPAVS SPSASGKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GDFPLPARAD  120
MNDVLAALAR EAGWTVEADG TTFRQSPPPS HTGSFGVRPV ESPLLKNCAV KECQPSVLRI  180
DESLSPGSLD SMVISERENS RNEKYTSASP INSVIECLDA DQLIQDVHSG MHQNDFTENS  240
RVPVYVMLAN GFINNCCHLI DPQGVRQELS HMKSLDVDGV VVECWWGVVE AWSPQKYVWS  300
GYRELFNIIQ EFKLKLQVLM AFHEYGGNDS GDVLISLPQW VLEIGKDNQD IFFTDREGRR  360
NTECLSWGID KERVLKGRTG IEVYFDFMRS FRTEFNDLFT EGLITAIEIG LGPSGELKYP  420
SFSERLGWRY PGIGEFQCYD KYSQQNLRKA AKLRGHSFWA KGPDNAGQYN SRPHETGFFC  480
ERGSCSLLVV QDSKPRSRAN SRIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	2e-81	242	484	12	253	BETA-AMYLASE
1q6c_A	2e-81	242	484	12	253	beta-amylase
1q6g_A	1e-81	242	484	12	253	beta-amylase
1uko_A	2e-81	242	484	12	253	Beta-amylase
1uko_B	2e-81	242	484	12	253	Beta-amylase
1uko_C	2e-81	242	484	12	253	Beta-amylase
1uko_D	2e-81	242	484	12	253	Beta-amylase
1ukp_A	2e-81	242	484	12	253	Beta-amylase
1ukp_B	2e-81	242	484	12	253	Beta-amylase
1ukp_C	2e-81	242	484	12	253	Beta-amylase
1ukp_D	2e-81	242	484	12	253	Beta-amylase
1wdp_A	2e-81	242	484	12	253	Beta-amylase
1wds_A	2e-81	242	484	12	253	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0961s0160.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304400.2	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2K2B4Z1	0.0	A0A2K2B4Z1_POPTR; Beta-amylase
STRING	POPTR_0003s10570.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0961s0160.2.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]