PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0947s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 831aa    MW: 94372.1 Da    PI: 5.1875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0947s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS203.41.3e-6253621374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                             l++ L+ecA+a+++g+l+ a++l  ++  ++s ++  +++++++yf+eALa+rl++    ly   p+       +s +   + l  +
  SapurV1A.0947s0100.1.p   5 LIDKLMECAKAIEDGELKHADSLFREIGLQSSTEAnLATRKIVKYFAEALARRLYQ----LYPRNPMPL-----VSFREDLDILGCK 82 
                             5789**************************9999856******************9....553333332.....3444444455678 PP

                    GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger..LakfAe 170
                               P+l+f+  +     ++a+ g+++vHiiDf++     Q ++L++ L++  ++  s RiT vg+    +    +++g r  L+  Ae
  SapurV1A.0947s0100.1.p  83 FEPFLRFASHAIIPPFYDALRGKKQVHIIDFSVAVNiWQHVTLMKLLSKELGSRLSYRITLVGP----K--LSRHLGARvfLNATAE 163
                             89******************************986527**************************....3..34444444449***** PP

                    GRAS 171 elgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                             + +++fe++  +a++++++ + +L++ +   +Ea++V + ++lh++l+ + ++ +    v++ +k+l+P+v+v+veqeadhns++++
  SapurV1A.0947s0100.1.p 164 KNHIDFEYEEYLANSVAEIVVATLQLGRrskEEAVVVDWEFELHKFLAVPSAVFN---LVMSKLKDLKPEVMVIVEQEADHNSPDLV 247
                             **********9999**********9888788****************99988888...9**************************** PP

                    GRAS 255 erflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                             +r++++++yys+lfdsl e k+   ++ r+  Er  ++r+i++vva+eg  + erhet ++Wr+rl  aGF+p+++  ++++     
  SapurV1A.0947s0100.1.p 248 DRLTKSFKYYSVLFDSLkEDKFEMLEDYRVLWERI-FRRKISKVVAAEGVGHAERHETWAQWRDRLFPAGFHPARIVFRETM----- 328
                             *****************999999999999999999.**************************************99877654..... PP

                    GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++k + yr+ee++   +l+  + p  + SaW+
  SapurV1A.0947s0100.1.p 329 AFNYKTNQYRIEEKNRRPLLCRLHYPFAVSSAWK 362
                             4456666799***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.2371347IPR005202Transcription factor GRAS
PfamPF035144.5E-605362IPR005202Transcription factor GRAS
SMARTSM006144.6E-15779829IPR003656Zinc finger, BED-type
PROSITE profilePS5080812.734779830IPR003656Zinc finger, BED-type
PfamPF028924.4E-9782826IPR003656Zinc finger, BED-type
SuperFamilySSF576673.33E-7782827No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MAPPLIDKLM ECAKAIEDGE LKHADSLFRE IGLQSSTEAN LATRKIVKYF AEALARRLYQ  60
LYPRNPMPLV SFREDLDILG CKFEPFLRFA SHAIIPPFYD ALRGKKQVHI IDFSVAVNIW  120
QHVTLMKLLS KELGSRLSYR ITLVGPKLSR HLGARVFLNA TAEKNHIDFE YEEYLANSVA  180
EIVVATLQLG RRSKEEAVVV DWEFELHKFL AVPSAVFNLV MSKLKDLKPE VMVIVEQEAD  240
HNSPDLVDRL TKSFKYYSVL FDSLKEDKFE MLEDYRVLWE RIFRRKISKV VAAEGVGHAE  300
RHETWAQWRD RLFPAGFHPA RIVFRETMAF NYKTNQYRIE EKNRRPLLCR LHYPFAVSSA  360
WKPDVTQDES LSMEIYDLGS MLGSFNIAQD ASRESGKASN SVSHEDDADD DIIMMKGNSW  420
STECFSINQV AASAEIFDIL EYVCHVHDLP MALTWISDRR ADDKNSREKF RLHVVDTACF  480
VNDVGMKGFF EACVEGPPLE EGQGVAGKAL QSKMQFVPDV ADLDAIDYPF LHAAWEFGLH  540
AVLAIKLAST YMRSVDYILE FVFPLEMREI SAQSLLVNEI VSILQKNSRN SWIVCNEELS  600
RANICSEVEI MAEEVGTITI TPAAIPASQP PELSEIGSLN SSQARYLCNI LYPPGDEVRV  660
PETHDQEVEQ QNSIFRPAAD HFNTSEVEIM AEEVGTNTIT QAAIPASQPP ELAEIGCLSS  720
FSWLNVNPPG DEVRVPETHD QEVEQQNSTF RPAADLLPEH EVDGVDSYHF NAGTSSKRRR  780
TSDVWQYFDE VRENGEVWAK CRNCSKKYRG ESTRGTTNLR KHLRSCRGMK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-171136325380Protein SCARECROW
5b3h_A4e-171136324379Protein SCARECROW
5b3h_D4e-171136324379Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0947s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043655.10.0PREDICTED: uncharacterized protein LOC105139054
RefseqXP_024445051.10.0uncharacterized protein LOC112324780
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2062935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-60GRAS family protein