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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0937s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 573aa MW: 62849.9 Da PI: 8.3374 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.1 | 9.8e-16 | 320 | 366 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq SapurV1A.0937s0140.1.p 320 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 366 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-21 | 313 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.93E-16 | 319 | 370 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.2E-21 | 320 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-13 | 320 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MNPYAPDFEM DDDYSLPPPP STLNRPRKPA MQEEEIMELL WQNGQVVMHS QRSQKKSSSP 60 PSKLDDAVLP ADQLQGTKEI RSSHDQHQQH HLFMQEDEMA SWLHYPLNDT NFDHEFCADF 120 LYTPTASTAS ITREAAVTNA AASPVRGLTQ RTEPRSCLAV SAPRPPIAPV RRAEVMQNFA 180 HFSRHRAANV SEPGPSNSRS VVRESTVVDS CETPKARTSE TAFARSADNS VAVAGKGSSA 240 PSRKRKMTAT PCEMTSTSSP GCSSASAEPP ALMAPVEDRK RKGREEEAEC HSEDAEFESA 300 DAKKQTRGST SSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPRCNKSD KASMLDEAIE 360 YLKSLQLQVQ MMSMGCSMVP MMFPGFQNYM PPMGMGMGMG MGMGMGIEMG LSRPVMPFPN 420 VLASAPSATP AAAAHLGPSR FPVPPFHVPP IPAPDPSRVH PANQVYPMLG SPGQQNPNQP 480 RVSNFVDPYQ HYLGLHQMHI PGVPQNQAMA QPSTSRGAEN PDNHQSGKMI FLRSTTGSRL 540 GCDGKKVAHA FASSEAKKRS YATWLSSFYP TH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | SRKRKM |
2 | 324 | 329 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0937s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC297695 | 0.0 | KC297695.1 Populus tomentosa PIL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451356.1 | 0.0 | transcription factor PIF1 isoform X1 | ||||
TrEMBL | A0A3N7FKR0 | 0.0 | A0A3N7FKR0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s25410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 5e-73 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0937s0140.1.p |