PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0930s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 370aa    MW: 40666.8 Da    PI: 4.9485
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0930s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+ Ed+ l+d+ k +G g W+ I r+ g++R++k+c++rw +yl
  SapurV1A.0930s0010.1.p 14 KGAWTPVEDKMLLDYLKIHGEGKWSNIVRETGLKRCGKSCRLRWMNYL 61
                            79********************************************97 PP
2Myb_DNA-binding46.96.5e-1567110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++  +E++l+++ +k+lG++ W++Ia +++ gRt++++k++w++
  SapurV1A.0930s0010.1.p  67 RGNFADDEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 110
                             79999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.224961IPR017930Myb domain
SuperFamilySSF466891.76E-2812108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-221568IPR009057Homeodomain-like
CDDcd001673.06E-121661No hitNo description
PROSITE profilePS5129423.99962116IPR017930Myb domain
SMARTSM007179.1E-1466114IPR001005SANT/Myb domain
PfamPF002495.8E-1367110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2369115IPR009057Homeodomain-like
CDDcd001671.46E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRKTGCSKD GLNKGAWTPV EDKMLLDYLK IHGEGKWSNI VRETGLKRCG KSCRLRWMNY  60
LRPGIKRGNF ADDEEDLIIR MHKLLGNRWS LIAGRLPGRT DNEIKNYWHT TIAKKARGKP  120
EVDRKQIAPG SPSGAASSLK NQSTVESQCT TGVVPAATAS QENSDQDHQL SVAMPQFTTS  180
NLQYGAASNF KNQSTIESQC TTEVVAATST LQESTAQVHQ DSIAMAQSTD SNLQYDMPKT  240
YESESSSKGL ASGGEDNSSD IMMYNDYMDD FSKILDSDFT EFSGIHDIFS TDHHSNNTDA  300
VNGDHHGVSS DGCKSRETTE FPEKLLESDN WSGNKCGLAD QGFDFMSLLS FLDSTDDEWT  360
ADAFGTKVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0930s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371801.10.0myb-related protein 308
TrEMBLB9NA030.0B9NA03_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1659238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-56myb domain protein 3