PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0921s0120.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 993aa MW: 112900 Da PI: 6.0903

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0921s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.1	6e-23	222	308	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+ YA+++GF++rk k ++ ng+i kr f Csk+g+r +++ + + ++ +r+etrtgC+ak++ + e +gkw+v+++++eHnH SapurV1A.0921s0120.1.p 222 RFYEGYANKIGFRTRKGKVQRL-SNGSIRKRFFFCSKQGFRLKKQAD-KITKYKRKETRTGCDAKIQFTVE-NGKWVVSQFKQEHNH 305 5***************9998.8999************9999.99999*************9.************* PP FAR1 88 ela 90 +l SapurV1A.0921s0120.1.p 306 HLE 308 996 PP
2	Homeobox	22.8	1.5e-07	888	927	16	55
HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 e+ Fe+++ + + LA++l+L r+V+ WFq rRa+e SapurV1A.0921s0120.1.p 888 ENIFEEDNRIPNSIQLSLAEQLNLVPRKVQDWFQKRRARE 927 67889866666666678*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-20	222	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-23	417	511	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	691	729	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-5	703	729	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	704	731	IPR006564	Zinc finger, PMZ-type
SMART	SM00389	2.8E-4	881	934	IPR001356	Homeobox domain
CDD	cd00086	3.28E-5	888	931	No hit	No description
Pfam	PF00046	5.0E-5	888	927	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-6	888	930	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.673	888	930	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.5E-7	891	932	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence Send to blast
MAETSDSAAG NDPQTSFIDQ DAAQGSSDSF LHNVYSRNQD KASTSEWGDS GNGLEFAFGS 60 SVKGAGVSSL DYEWGHVFEK SSKTKRKKKN TDVSSSSALN SPSDLSLSGA LSQISKDLSL 120 SSPSLFSSGE IDEDRENEEA DLLKSHGENL QAELGQKMDT SAISAFIHYL SECNGVDMLS 180 SDSDGDEDEI QATSVFGASE SKDSCQNPEI GMEFSSEEEA YRFYEGYANK IGFRTRKGKV 240 QRLSNGSIRK RFFFCSKQGF RLKKQADKIT KYKRKETRTG CDAKIQFTVE NGKWVVSQFK 300 QEHNHHLENH RHTTRSCTKT SEARLILNEN NAEMAKDAGT PKSTELCNMV CSTCVLDKTR 360 DGKHPEEVQN LLNCLRHLQA EDLSLFYAVQ LDSNNRLKNL FWRDGRSMVD YDYFGDVLIL 420 DTTFRMDKYD MICTPFWGLN HHRQYVMFGC AFLLDESKES FVWLLETFME AMGRKQPKTI 480 VTDENQVMVE AVKVVLLDAE HQFGAWFIRR NALKHVFVFY SQPAFESIFN SCISYCQTEE 540 EFESKWDFLL KKFNLRENAW LNNLYLSRER WANVFHKETF SAGIKWCEDI INVFQNSTSD 600 TMNLSMFVHQ YLKVVETQRL EELYEDLRCG ETTKVLILSG SAMEKQAANI YTRKIFSIFQ 660 GELVKSLSVA IEEIGGDGTN ATFKLTEEGQ KESIVEFSCL DSNLACSCKK YESEGILCVH 720 ALKVLNARNI FHIPAQYILK RWTICAKDSV AEDEHGQKLA DQKQQPMIFL LKKTLDVIYK 780 TSAFEDCQKI AMHYLDKASK RVEAVLRAKT TDHLKSRKVS TDGLDVSLPT ELDISLFLTS 840 SQMDFERVRG GGSAGKKRDL DLESGQASSS SNDGAENPLV QKKPRFSENI FEEDNRIPNS 900 IQLSLAEQLN LVPRKVQDWF QKRRAREMSK QMDYEILKED NELLKKANER LRRQIEFLIP 960 LVKSPPRKIP PSRERIQRAF SSCSDESSTP IQ*

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence Send to blast

MAETSDSAAG NDPQTSFIDQ DAAQGSSDSF LHNVYSRNQD KASTSEWGDS GNGLEFAFGS  60
SVKGAGVSSL DYEWGHVFEK SSKTKRKKKN TDVSSSSALN SPSDLSLSGA LSQISKDLSL  120
SSPSLFSSGE IDEDRENEEA DLLKSHGENL QAELGQKMDT SAISAFIHYL SECNGVDMLS  180
SDSDGDEDEI QATSVFGASE SKDSCQNPEI GMEFSSEEEA YRFYEGYANK IGFRTRKGKV  240
QRLSNGSIRK RFFFCSKQGF RLKKQADKIT KYKRKETRTG CDAKIQFTVE NGKWVVSQFK  300
QEHNHHLENH RHTTRSCTKT SEARLILNEN NAEMAKDAGT PKSTELCNMV CSTCVLDKTR  360
DGKHPEEVQN LLNCLRHLQA EDLSLFYAVQ LDSNNRLKNL FWRDGRSMVD YDYFGDVLIL  420
DTTFRMDKYD MICTPFWGLN HHRQYVMFGC AFLLDESKES FVWLLETFME AMGRKQPKTI  480
VTDENQVMVE AVKVVLLDAE HQFGAWFIRR NALKHVFVFY SQPAFESIFN SCISYCQTEE  540
EFESKWDFLL KKFNLRENAW LNNLYLSRER WANVFHKETF SAGIKWCEDI INVFQNSTSD  600
TMNLSMFVHQ YLKVVETQRL EELYEDLRCG ETTKVLILSG SAMEKQAANI YTRKIFSIFQ  660
GELVKSLSVA IEEIGGDGTN ATFKLTEEGQ KESIVEFSCL DSNLACSCKK YESEGILCVH  720
ALKVLNARNI FHIPAQYILK RWTICAKDSV AEDEHGQKLA DQKQQPMIFL LKKTLDVIYK  780
TSAFEDCQKI AMHYLDKASK RVEAVLRAKT TDHLKSRKVS TDGLDVSLPT ELDISLFLTS  840
SQMDFERVRG GGSAGKKRDL DLESGQASSS SNDGAENPLV QKKPRFSENI FEEDNRIPNS  900
IQLSLAEQLN LVPRKVQDWF QKRRAREMSK QMDYEILKED NELLKKANER LRRQIEFLIP  960
LVKSPPRKIP PSRERIQRAF SSCSDESSTP IQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0921s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443203.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1XBC7	0.0	A0A2K1XBC7_POPTR; Uncharacterized protein
STRING	POPTR_0149s00230.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	SapurV1A.0921s0120.1.p