PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0920s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 151aa    MW: 16349.4 Da    PI: 8.9928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0920s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.8e-116282525
                            --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                            lC++f +tG+C+yGd+Ck+ H
  SapurV1A.0920s0170.1.p 62 LCNRFVKTGFCPYGDSCKYLH 82
                            8******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.15E-12450No hitNo description
PfamPF062201.3E-6536IPR013085Zinc finger, U1-C type
SMARTSM003560.00125784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3195785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-76183IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-86282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-86282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPVGKYDCDY CDKQFQDTPH ARKRHLQSSS HLRAKSLWFS KNSNNNTLNS INTDAGGFVK  60
GLCNRFVKTG FCPYGDSCKY LHANFATSQG TAFKDNVQSP TMPGNQMVGG SSFPGAAVRE  120
SMGMSWGNLP PSLKPPPEGG YPPLPIVDWG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0920s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318931.12e-94zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP117e-42C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A3N7FUX64e-93A0A3N7FUX6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s00620.16e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-33C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]