PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0918s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 318aa    MW: 35219.4 Da    PI: 7.6114
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0918s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-162875148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+eEd ll+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
  SapurV1A.0918s0130.1.p 28 RGPWTPEEDGLLASYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 75
                            89******************************99************97 PP
2Myb_DNA-binding45.91.3e-1486126648
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0918s0130.1.p  86 DDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 126
                             69***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0592375IPR017930Myb domain
SuperFamilySSF466891.21E-2725122IPR009057Homeodomain-like
SMARTSM007171.9E-112777IPR001005SANT/Myb domain
PfamPF002491.9E-142875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-212982IPR009057Homeodomain-like
CDDcd001671.42E-93075No hitNo description
PROSITE profilePS5129424.05876130IPR017930Myb domain
SMARTSM007176.1E-1380128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2383131IPR009057Homeodomain-like
PfamPF002492.8E-1386126IPR001005SANT/Myb domain
CDDcd001674.32E-1186126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRKPTSATAT ATATAKPTPC CIKVGLKRGP WTPEEDGLLA SYIKKEGEGR WRTLPKKAGL  60
LRCGKSCRLR WMNYLRPSVK RGQIADDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN  120
YWNTHLSKKL ISQGIDPRTH KPLDPQSFDP SKPSLSKANL SQERLKEPMK TVSSGLEETT  180
SDSTHIANNK ENEYFQNDDI NAHLDAQHLA NHFIASKGYT GLLNYDGTSG MDLRGNQRLG  240
IGEDDDQDIN SGTDDVFSFL NSLINEEAFQ QHQILNVPNV NSTAPSSSDP FVSTFGLGIT  300
GWESPLMSSA LNQNDSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25261305108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0918s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8110250.0KF811025.1 Populus tomentosa putative R2R3 MYB transcription factor MYB006 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297634.10.0transcription repressor MYB5
SwissprotQ388501e-80MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9GLF00.0B9GLF0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s04240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-82myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]