PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0890s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 317aa    MW: 34774.9 Da    PI: 6.1588
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0890s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W++eEd  l+ + + +G+g +W + +++ g++R++k+c++rw++yl
  SapurV1A.0890s0050.1.p 14 RGPWSPEEDATLKSYLEIHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                            89*********************************************97 PP
2Myb_DNA-binding46.68.2e-1569111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +T+eEd ++  +  q+G++ W++Ia+ ++ gRt++++k++w++
  SapurV1A.0890s0050.1.p  69 GGFTEEEDNIICSLYSQMGSR-WSLIAAQLP-GRTDNDVKNYWNT 111
                             569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.56962IPR017930Myb domain
SuperFamilySSF466892.4E-2711109IPR009057Homeodomain-like
SMARTSM007173.8E-111364IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241569IPR009057Homeodomain-like
CDDcd001672.06E-81662No hitNo description
PROSITE profilePS5129423.80863117IPR017930Myb domain
SMARTSM007178.1E-1467115IPR001005SANT/Myb domain
PfamPF002494.3E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2470117IPR009057Homeodomain-like
CDDcd001675.78E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE IHGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYSQMGSRW SLIAAQLPGR TDNDVKNYWN TKLKKKILVG  120
KISLSIKNSS TTAPPASVTN IPTIPCSTSP ILYIPKAETE STVTFSDHYS LTQSSGAFPT  180
LSDAGYEPVI SSSTQNWSQN HFQYSSFPGI VDMSEFRASS MNSHIVSPSQ EGSTMSDSSS  240
LAMDYKGLSL PSTHGGPEEV GILMDSELGF PSDFVNDLLF QDRESEVAAN CFQYFADYGY  300
VDMKPQGLNQ GVTNHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-24141174105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-24141174105C-Myb DNA-Binding Domain
1msf_C1e-24141174105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0890s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015974.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_011019548.10.0PREDICTED: transcription factor RAX2-like
TrEMBLB9HE030.0B9HE03_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-76myb domain protein 84