PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0881s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27437.1 Da PI: 8.2373 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.4e-12 | 66 | 118 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + ++ Lr llP ++ ++K s ++ + v+YIk+Lq SapurV1A.0881s0080.1.p 66 QKMMHRNIERQRREEMTTLYASLRALLPLDF--IKGKRSISDHMNESVNYIKYLQ 118 6899*************************75..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.78E-10 | 64 | 122 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-13 | 65 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.51 | 65 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-10 | 67 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-4 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MFPLHQGDEL CFNTSSNPHQ QHSIPQDLIL AQYAALHGSD TATKMENGRR RNLISMDSNN 60 EVARDQKMMH RNIERQRREE MTTLYASLRA LLPLDFIKGK RSISDHMNES VNYIKYLQKK 120 IKELSAKRDG LKKLSNLSFD APPSESSNKY SPISSVTLHP YPGGVEIVFD SDFRGQYFPL 180 SRVLQVLLED GISVVNCVST KVNERLFHTV QTEVDDPASL NLSELRQKLT LLVVSSTSDL 240 SK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0881s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030012.1 | 1e-148 | PREDICTED: transcription factor bHLH118-like | ||||
Swissprot | Q9FLI1 | 6e-44 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | B9I4H5 | 1e-145 | B9I4H5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s14080.1 | 1e-146 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 9e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0881s0080.1.p |