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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0881s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28279.7 Da PI: 5.8686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 76 | 127 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++a +e+ErrRR++i + + L llP + ++K s ++ L +A +YI++L SapurV1A.0881s0070.1.p 76 KKMARKEIERRRRKQISTLHASLGNLLPReL---IKGKRSTSDHLNEADKYIRHL 127 68999************************88...********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-10 | 72 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-12 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.506 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MFPFQQNLDE FLAQISSNLP YQEDFATDFQ YLIYGQESVH GICKQTISVD EIQKHKILAS 60 SNASDHSGNI IRDDEKKMAR KEIERRRRKQ ISTLHASLGN LLPRELIKGK RSTSDHLNEA 120 DKYIRHLNCN IQELSAKRDE LNKLFNSSTF EHGTEISGHN LLDCAKVRPI LGGVEIVVSG 180 GCGEEGVPLS RVLETLLEEG FDAVSYISTQ KDERRYGTIQ CQATDRNCID SDGLQRKLND 240 VISLSSYVDF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0881s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318855.1 | 1e-136 | transcription factor bHLH120 | ||||
Refseq | XP_011030013.1 | 1e-136 | PREDICTED: transcription factor bHLH120-like | ||||
TrEMBL | A0A3N7FW13 | 1e-135 | A0A3N7FW13_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s14070.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 4e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0881s0070.1.p |