PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0868s0010.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 392aa    MW: 42858.5 Da    PI: 8.9137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0868s0010.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.4e-17115164255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r +h++ E+rRR++iN++f++Lrel+P+     ++K +Ka+ L +++eY++ Lq
  SapurV1A.0868s0010.5.p 115 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 164
                             889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-26110187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19111184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-14115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-15115168No hitNo description
SMARTSM003531.7E-13119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGKTGKENVG ERSNIIREAA VKTGQWTTSE RPSHSSSNNH RNSFSSLSSS QPPGLKSTQS  60
FIEMIQSAKG STLDDDLDDE ETFLLKKETP SPIHKGELRV KIDGKSNDQK PNTPRSKHSA  120
TEQRRRSKIN DRFQTLRELI PHGDQKRDKA SFLLEVIEYV QFLQEKVQKY EGSYQGWNHE  180
LAKLGPWRNN TRPVESSIDQ SRGVNSGVSP ALLLAAKLDE KNITISSSIN PGGARNPDES  240
DTSSASTFNA MDHQPGITNK AMPFPISLQP NLFNTGRIAG AAAQFQPRLA FDAENTETEP  300
QPHPQPWHAI SCTSDGAVAS DKLKQQNLTV EGGTISISSA YSQGLLNTLT QALQSSGVDL  360
SQASVSVQIE LGKKGNSRQT APTSIVKIYW H*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0868s0010.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322046.30.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ32e-81BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2K1XI220.0A0A2K1XI22_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.35e-82bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]