PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0868s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 421aa MW: 46231.2 Da PI: 9.4349

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0868s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.7e-17	116	165	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P+ ++K +Ka+ L +++eY++ Lq SapurV1A.0868s0010.2.p 116 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 165 889***********************7....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.6E-26	111	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-19	112	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.844	114	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-14	116	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-15	116	169	No hit	No description
SMART	SM00353	1.7E-13	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MILFQYLSDN WKYVRHVTEA AVKTGQWTTS ERPSHSSSNN HRNSFSSLSS SQPPGLKSTQ 60 SFIEMIQSAK GSTLDDDLDD EETFLLKKET PSPIHKGELR VKIDGKSNDQ KPNTPRSKHS 120 ATEQRRRSKI NDRFQTLREL IPHGDQKRDK ASFLLEVIEY VQFLQEKVQK YEGSYQGWNH 180 ELAKLGPWRN NTRPVESSID QSRGVNSGVS PALLLAAKLD EKNITISSSI NPGGARNPDE 240 SDTSSASTFN AMDHQPGITN KAMPFPISLQ PNLFNTGRIA GAAAQFQPRL AFDAENTETE 300 PQPHPQPWHA ISCTSDGAVA SDKLKQQNLT VEGGTISISS AYSQGLLNTL TQALQSSGVD 360 LSQASVSVQI ELGKKGNSRQ TAPTSIDNNV PPSNQGTMRS RFSSGEESNQ ALKKLKTSKR 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MILFQYLSDN WKYVRHVTEA AVKTGQWTTS ERPSHSSSNN HRNSFSSLSS SQPPGLKSTQ  60
SFIEMIQSAK GSTLDDDLDD EETFLLKKET PSPIHKGELR VKIDGKSNDQ KPNTPRSKHS  120
ATEQRRRSKI NDRFQTLREL IPHGDQKRDK ASFLLEVIEY VQFLQEKVQK YEGSYQGWNH  180
ELAKLGPWRN NTRPVESSID QSRGVNSGVS PALLLAAKLD EKNITISSSI NPGGARNPDE  240
SDTSSASTFN AMDHQPGITN KAMPFPISLQ PNLFNTGRIA GAAAQFQPRL AFDAENTETE  300
PQPHPQPWHA ISCTSDGAVA SDKLKQQNLT VEGGTISISS AYSQGLLNTL TQALQSSGVD  360
LSQASVSVQI ELGKKGNSRQ TAPTSIDNNV PPSNQGTMRS RFSSGEESNQ ALKKLKTSKR  420
*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0868s0010.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322046.3	0.0	transcription factor BIM1 isoform X1
Refseq	XP_024442672.1	0.0	transcription factor BIM1 isoform X2
Swissprot	Q9LEZ3	8e-76	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2K1XI22	0.0	A0A2K1XI22_POPTR; Uncharacterized protein
TrEMBL	A0A2K1XI27	0.0	A0A2K1XI27_POPTR; Uncharacterized protein
STRING	POPTR_0015s03550.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	2e-76	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0868s0010.2.p

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]