PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0868s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 527aa MW: 57413.6 Da PI: 8.253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0868s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.3	5.1e-17	222	271	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P+ ++K +Ka+ L +++eY++ Lq SapurV1A.0868s0010.1.p 222 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 271 889***********************7....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-25	217	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-19	218	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.844	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.63E-15	222	275	No hit	No description
Pfam	PF00010	1.9E-14	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-13	226	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
GGFLQTHDFL QPLERVSKAT ATEVEILTIE KPPPPAPPPS VEHILPGGIG TYSISHVSYF 60 NQRVPKPENA LFSVAQASST DKNDENSNCS SYSASGFTLW EESALKMGKT GKENVGERSN 120 IIREAAVKTG QWTTSERPSH SSSNNHRNSF SSLSSSHRPP GLKSTQSFIE MIQSAKGSTL 180 DDDLDDEETF LLKKETPSPI HKGELRVKID GKSNDQKPNT PRSKHSATEQ RRRSKINDRF 240 QTLRELIPHG DQKRDKASFL LEVIEYVQFL QEKVQKYEGS YQGWNHELAK LGPWRNNTRP 300 VESSIDQSRG VNSGVSPALL LAAKLDEKNI TISSSINPGG ARNPDESDTS SASTFNAMDH 360 QPGITNKAMP FPISLQPNLF NTGRIAGAAA QFQPRLAFDA ENTETEPQPH PQPWHAISCT 420 SDGAVASDKL KQQNLTVEGG TISISSAYSQ GLLNTLTQAL QSSGVDLSQA SVSVQIELGK 480 KGNSRQTAPT SIDNNVPPSN QGTMRSRFSS GEESNQALKK LKTSKR*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

GGFLQTHDFL QPLERVSKAT ATEVEILTIE KPPPPAPPPS VEHILPGGIG TYSISHVSYF  60
NQRVPKPENA LFSVAQASST DKNDENSNCS SYSASGFTLW EESALKMGKT GKENVGERSN  120
IIREAAVKTG QWTTSERPSH SSSNNHRNSF SSLSSSHRPP GLKSTQSFIE MIQSAKGSTL  180
DDDLDDEETF LLKKETPSPI HKGELRVKID GKSNDQKPNT PRSKHSATEQ RRRSKINDRF  240
QTLRELIPHG DQKRDKASFL LEVIEYVQFL QEKVQKYEGS YQGWNHELAK LGPWRNNTRP  300
VESSIDQSRG VNSGVSPALL LAAKLDEKNI TISSSINPGG ARNPDESDTS SASTFNAMDH  360
QPGITNKAMP FPISLQPNLF NTGRIAGAAA QFQPRLAFDA ENTETEPQPH PQPWHAISCT  420
SDGAVASDKL KQQNLTVEGG TISISSAYSQ GLLNTLTQAL QSSGVDLSQA SVSVQIELGK  480
KGNSRQTAPT SIDNNVPPSN QGTMRSRFSS GEESNQALKK LKTSKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0868s0010.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024442672.1	0.0	transcription factor BIM1 isoform X2
Swissprot	Q9LEZ3	1e-110	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2K1XI27	0.0	A0A2K1XI27_POPTR; Uncharacterized protein
STRING	POPTR_0015s03550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	1e-108	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0868s0010.1.p

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]