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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0865s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 112aa MW: 12671.2 Da PI: 4.6568 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 56.3 | 6.5e-18 | 1 | 110 | 270 | 374 |
GRAS 270 sleaklpreseerikvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352 +le+++ ++s+er ++Ere +r+iv v+ac +++ er+e+ +W+ rl+ea F+pv +s+++++++k+ll+++k g+ + SapurV1A.0865s0080.1.p 1 MLEESFVPTSNERLMLERE-SSRNIVRVLACDEENgggECERRERGIQWSGRLREA-FSPVGFSDDVVDDVKALLKRYK-SGWALVl 84 57899999***********.9**********9887666799*************98.**********************.5555544 PP GRAS 353 ....eesgslvlgWkdrpLvsvSaWr 374 +++ ++l+Wk++p+v++SaW+ SapurV1A.0865s0080.1.p 85 aqgdNHESGIYLTWKEEPVVWASAWK 110 46645567778**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.2E-15 | 1 | 110 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MLEESFVPTS NERLMLERES SRNIVRVLAC DEENGGGECE RRERGIQWSG RLREAFSPVG 60 FSDDVVDDVK ALLKRYKSGW ALVLAQGDNH ESGIYLTWKE EPVVWASAWK P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 7e-28 | 3 | 111 | 370 | 474 | Protein SHORT-ROOT |
5b3h_B | 5e-28 | 3 | 111 | 316 | 420 | Protein SHORT-ROOT |
5b3h_E | 5e-28 | 3 | 111 | 316 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0865s0080.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217643 | 1e-125 | AC217643.1 Populus trichocarpa clone POP035-K18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372828.1 | 1e-67 | protein SHORT-ROOT | ||||
Refseq | XP_011037138.1 | 9e-68 | PREDICTED: protein SHORT-ROOT-like | ||||
Refseq | XP_024444296.1 | 1e-67 | protein SHORT-ROOT-like | ||||
Swissprot | A2YN56 | 1e-29 | SHR1_ORYSI; Protein SHORT-ROOT 1 | ||||
Swissprot | Q8H2X8 | 1e-29 | SHR1_ORYSJ; Protein SHORT-ROOT 1 | ||||
TrEMBL | U5FI43 | 3e-66 | U5FI43_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s05450.1 | 4e-67 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 4e-22 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0865s0080.1.p |
Publications ? help Back to Top | |||
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