PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0860s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 31490.7 Da PI: 6.3734 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5e-10 | 145 | 189 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L SapurV1A.0860s0050.1.p 145 HSIAERLRRERIAERIRALQELVPSvN------KTDRATMLDEIVDYVKFL 189 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-15 | 138 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.215 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-15 | 142 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-7 | 145 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-11 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MANKPTEPPT DDFLQEILGM PNYASAEADA GLAGAAAAAQ ASMMLQLSSG DGSGHISALG 60 GAPGGGSTGF HGFPLGLSLE QGKGGFLKPE DASGSGKRFR DEIVDGRAKN VFHGQPMPTT 120 VAIAPHPPSM RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPSV NKTDRATMLD 180 EIVDYVKFLR LQVKVLSMSR LGAAGAVAPL VTDIPLSSVE DETGEGGRNQ PAWEKWSNDG 240 TERQVAKLME ENVGTAMQFL QSKALCIMPI SLATAIYNTQ PPDTTTIVKP ETNPPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0860s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383684.1 | 0.0 | transcription factor UNE12 | ||||
Swissprot | O22768 | 1e-128 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | U5GGP3 | 1e-180 | U5GGP3_POPTR; BHLH family protein | ||||
STRING | POPTR_0005s23930.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5449 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-114 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0860s0050.1.p |
Publications ? help Back to Top | |||
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