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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0850s0170.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 35097 Da PI: 6.6313 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.3e-10 | 249 | 294 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er R ri +++ +L++l+P+ +k + +++L +Av+YIk+Lq SapurV1A.0850s0170.3.p 249 SIAERVSRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 294 5799999*****************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.954 | 243 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 245 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.49E-11 | 247 | 298 | No hit | No description |
SMART | SM00353 | 7.0E-10 | 249 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-7 | 250 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 256 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MMDAMNNLNC GTRLQQQQHQ HQSNYSASQG FYQNQSKPPL PDQKSGSEIN YRSMNSMGME 60 RLPSMKTNSS NNSNLVRHSS SPAGLFSDIN IEFENGYAVL RGMGDLGSGN GDTNYSAASR 120 PPPLGRMGSV AEMGNKNMGE NSPESGGFGE ARSSNYVSGY PIGSWDDSAM LSAGSKRHFT 180 DDDATLSGLN ASETQHDEEG GSRPPMLARH MSLPKTAAEI SVIEKFLYIQ DSVPCRIRAK 240 RGFATHPRSI AERVSRTRIS ERMRKLQDLV PNMDKQTNTS DMLDLAVDYI KDLQREVQIL 300 SEIRERCTCI NKQEQEP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0850s0170.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037857.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_011037858.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_011037859.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_011037860.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X1 | ||||
Refseq | XP_011037861.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X1 | ||||
TrEMBL | A0A3N7ECE0 | 1e-170 | A0A3N7ECE0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s22290.1 | 1e-161 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0850s0170.3.p |