PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0849s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 324aa    MW: 35763.3 Da    PI: 8.1162
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0849s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  SapurV1A.0849s0010.1.p 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding47.25e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  SapurV1A.0849s0010.1.p  67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNFWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.347965IPR017930Myb domain
SuperFamilySSF466896.36E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002493.3E-161461IPR001005SANT/Myb domain
CDDcd001671.09E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2465116IPR009057Homeodomain-like
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.67466116IPR017930Myb domain
PfamPF002491.7E-1367112IPR001005SANT/Myb domain
CDDcd001678.39E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNFWNT HLKKKLRKIQ  120
AGQGDQSRDG LSSAGSQQIS RGQWERRLQT DINMARQALC EALSPGKPSS LLTGLKPACV  180
NEKPAPAPIY ASSTENIARL LKGWMINGPK QSLKNSTTTQ NSFINMAGAD LLSGEGTPDK  240
ADKNGTGLSQ TFESLFGFDS FDSSNSDFSQ PMSPDTGLFQ DESKPNSGGQ VPLSLIERWL  300
FDEGAMQGKD YLNEVTIDED NLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-25141164105C-Myb DNA-Binding Domain
1msf_C6e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0849s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323853.10.0myb-related protein 306
SwissprotP813921e-117MYB06_ANTMA; Myb-related protein 306
TrEMBLB9IJX20.0B9IJX2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-110myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]