PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0847s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 372aa    MW: 42804.8 Da    PI: 7.444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0847s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49341592128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg 
  SapurV1A.0847s0050.2.p  34 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGA 119
                             79***************************.89***************8778899********************************* PP

                     NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             d+ + ++ ++ +glkktLvfy+g+apkg +t+W+m+eyrl
  SapurV1A.0847s0050.2.p 120 DRMIRTEISRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 159
                             *******99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5433179IPR003441NAC domain
PROSITE profilePS5100555.26433180IPR003441NAC domain
PfamPF023655.4E-2535159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAIAGTMSQN SNNEQNNYSH DKDDDDGHEH DMVMPGFRFH PTEEELVEFY LRRKVEGKRF  60
NVELITFLDL YRYDPWELPA LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD  120
RMIRTEISRS IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETERYQKA EISLCRVYKR  180
AGVEDHPSLP RSLPSRASSS RGPQSDKKHQ IHMTAERFQP CLGQSSQQVE IEKMSETDAS  240
SSSDVTTALG LSKHSNNEGM FLNLPKQDSS SLIPSCSNLF TVTSSVSSNP VEDLHRLLNY  300
QQASISHQQQ QQQFYFLQQP QHQSSQLSGM APQTPQQLPL NNLLPPSFPD RLWDQWNQMP  360
EANRDFNNPF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-553518019165NO APICAL MERISTEM PROTEIN
1ut4_B3e-553518019165NO APICAL MERISTEM PROTEIN
1ut7_A3e-553518019165NO APICAL MERISTEM PROTEIN
1ut7_B3e-553518019165NO APICAL MERISTEM PROTEIN
4dul_A3e-553518019165NAC domain-containing protein 19
4dul_B3e-553518019165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0847s0050.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452941.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-124NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2K2B1L00.0A0A2K2B1L0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s03670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]