PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0841s0060.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 741aa    MW: 81887.9 Da    PI: 8.2248
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0841s0060.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-21648728186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W+ +ev+ Li++r e+++r++  + +++lWee+s + ++ g++rsp qCk+ w +l ++y++ k+g+k+     ++ +pyf++++
  SapurV1A.0841s0060.3.p 648 KWKPEEVKSLIKMRGELHSRFQVVRGRMALWEEISTNFMADGINRSPGQCKSLWTSLVQKYEESKNGKKG-----QKAWPYFEDMD 728
                             7******************************************************************998.....467*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.0E-389180IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.42E-4514345IPR001279Metallo-beta-lactamase
PfamPF075218.6E-6288317IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.153641705IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-5642707IPR009057Homeodomain-like
PfamPF138379.2E-19646730No hitNo description
CDDcd122038.92E-21647712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MVMKITLVIP ALDHHTPIYA SSFTMELIKK RLKENGIIVP SRLKVFKTKR KFTAGPFEIE  60
PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPLDGKA FDRETLEELS KEGVTLMMSD  120
STNVLSPGRT TSESVVADAL LRRISAAKGR IITTQFASNI HRLGSVKAAA DLTGRKLVFV  180
GMSLRTYLEA AWKDGKAPID PSTLVKVEDI DSYAPKDLLI VTTGSQAEPR AALNLASYGS  240
SYAFKLNKED VILYSAKVIP GNESRVMKMM NRISEIGSTI VMGKNELLHT SGHGYRGELE  300
EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIHHTAVIK NGEMLGVSHL RNRRVLSNGF  360
VSLGKENLQL MYSDGDKAFG TSTELCIDER LKIATDGIVV VSMEILRPQN LDGLVQKSLK  420
GKIKITTRCL WLDKGKLLDA LHKAAHAALS SCPVNCPLTH MERTVSEMLR KMVRKYSGKR  480
PEVIAIAVEN PAAVLSDELN ARLSGNSHVG FGTSALRKIV DGHPKGNRVD RKQPDGNGYA  540
HLEKTLPQNL EVDGIEFERE LPEEEGMSSS PNLAEGHSSD SEDQDDFQKS FVPSSSQVNE  600
LVKSDESLVP PGEQMNKLKE DGVDSSDDGL LENQNSSLKR SKSVKRNKWK PEEVKSLIKM  660
RGELHSRFQV VRGRMALWEE ISTNFMADGI NRSPGQCKSL WTSLVQKYEE SKNGKKGQKA  720
WPYFEDMDNI LSDSETVAAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A8e-6017489104560RIBONUCLEASE J
5a0t_B8e-6017489104560RIBONUCLEASE J
5a0v_A8e-6017489104560RIBONUCLEASE J
5a0v_B8e-6017489104560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0841s0060.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438430.10.0uncharacterized protein LOC7454544 isoform X2
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A3N7FXR40.0A0A3N7FXR4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09780.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]