PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0840s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 38254.9 Da PI: 7.412 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ ++ g++R++k+c++rw +yl SapurV1A.0840s0010.1.p 14 KGPWTEEEDKKLINYIQKHGHGRWRLLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++ SapurV1A.0840s0010.1.p 67 RGKLSFEEEETIIQLHSVLGNK-WSAIATRLP-GRTDNEIKNYWNTH 111 788899****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.653 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.06 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.3E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.88E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGKSPCCEKN GVKKGPWTEE EDKKLINYIQ KHGHGRWRLL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGKL SFEEEETIIQ LHSVLGNKWS AIATRLPGRT DNEIKNYWNT HIKKRLLRMG 120 IDPVTHKPRL DLLQLYSVLN STVHNSSQLN ISSFLGNIGP ILNPDLLNLA TSYLSCQGNY 180 ISQDGQVENS QFQCSQPNEL PNQIQACPDT LNAQFLYETQ ISDANLEQLS CNPTSFSCQN 240 SLQSSWHTNG ESTPDICESF MSNYVYHDSN NKPIANDISF ETLPSLSFSS FLSTPSSSTT 300 PLRSSSTTCV NVSTEDEKDS YCSNILVFGI PSSLDPNRHI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0840s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216603 | 1e-133 | AC216603.1 Populus trichocarpa clone POP093-E09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370357.1 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9LDR8 | 1e-99 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | B9N565 | 0.0 | B9N565_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s41920.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-99 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0840s0010.1.p |
Publications ? help Back to Top | |||
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