PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0834s0190.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 207aa MW: 23717.1 Da PI: 9.8458 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 91.9 | 8.5e-29 | 42 | 128 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k k+gkw+vtk+++eH+H+ SapurV1A.0834s0190.4.p 42 FYNAYATRTGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKIKSGKWVVTKFVKEHTHT 126 ******************************************9988..9************************************** PP FAR1 89 la 90 l+ SapurV1A.0834s0190.4.p 127 LT 128 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-25 | 42 | 128 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDKETLAIDT IPDAAPAIMS KITADEPYFG QEFDSEAAAH AFYNAYATRT GFVIRVSKLS 60 RSRRDGSAIG RALVCNKEGF RMPDKREKIV RQRVETRVGC RAMILVRKIK SGKWVVTKFV 120 KEHTHTLTTV KGRRDCIYDQ YPNEHDKIRE LSQQLAIEKK RAATYKRNLE LIFEQIEEHN 180 ESLSKKIQHI VDSVGDMENK EQKSQT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0834s0190.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 1e-150 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309799.3 | 1e-135 | protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
Refseq | XP_024460858.1 | 1e-135 | protein FAR1-RELATED SEQUENCE 12 isoform X2 | ||||
Swissprot | Q9SZL8 | 3e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K1ZTL4 | 1e-134 | A0A2K1ZTL4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01870.1 | 1e-135 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-94 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0834s0190.4.p |
Publications ? help Back to Top | |||
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