PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0834s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 265aa MW: 30103.9 Da PI: 5.1662 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 91.1 | 1.5e-28 | 100 | 186 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k k+gkw+vtk+++eH+H+ SapurV1A.0834s0190.1.p 100 FYNAYATRTGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKIKSGKWVVTKFVKEHTHT 184 ******************************************9988..9************************************** PP FAR1 89 la 90 l+ SapurV1A.0834s0190.1.p 185 LT 186 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-25 | 100 | 186 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MEVIESFDVV FTVDFIVDGD ANGDVLGNAV VDIAGAGDET EIFENSVEEE FEQYEDRNMD 60 KETLAIDTIP DAAPAIMSKI TADEPYFGQE FDSEAAAHAF YNAYATRTGF VIRVSKLSRS 120 RRDGSAIGRA LVCNKEGFRM PDKREKIVRQ RVETRVGCRA MILVRKIKSG KWVVTKFVKE 180 HTHTLTTVKG RRDCIYDQYP NEHDKIRELS QQLAIEKKRA ATYKRNLELI FEQIEEHNES 240 LSKKIQHIVD SVGDMENKEQ KSQT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0834s0190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 0.0 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309799.3 | 1e-174 | protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
TrEMBL | A0A2K1ZTL4 | 1e-164 | A0A2K1ZTL4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01870.1 | 1e-173 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 8e-94 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0834s0190.1.p |