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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0834s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 28496.3 Da PI: 5.4351 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.4 | 4.4e-27 | 80 | 170 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY eYAk++GF++r+++ ++s +n ++ r+fvCs+eg+r+ +++ ++++ +r++tr gCka++++ ++ gkw+vtk+++eHn SapurV1A.0834s0140.1.p 80 DFYYEYAKQTGFTIRTNRIRHSLKNMAVIGRDFVCSREGFRAAKHSLrKDRALPPRPVTREGCKAMIRMAARDGGKWVVTKFVKEHN 166 6****************************************99988723444559******************************** PP FAR1 87 Hela 90 H+l+ SapurV1A.0834s0140.1.p 167 HKLM 170 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.0E-25 | 80 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTSTTDGRSF LDSDGGSDEE VFESFGEHEA SQDGLLQQCI SQCAVDNDMI LTESSMENLS 60 VDGLEPYTGM AFPSLDDARD FYYEYAKQTG FTIRTNRIRH SLKNMAVIGR DFVCSREGFR 120 AAKHSLRKDR ALPPRPVTRE GCKAMIRMAA RDGGKWVVTK FVKEHNHKLM THCKFLGELP 180 TINILSEEEK DKKIQDLYHE LQRERERSAA FQQQLCMILK DIKEHEDFMS LRVEDIVKTL 240 KEIELCDL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0834s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 7e-93 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309805.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024461384.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | B9HH50 | 1e-169 | B9HH50_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01950.1 | 1e-170 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-42 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0834s0140.1.p |