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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0834s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30677.2 Da PI: 6.0846 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.5 | 5.8e-28 | 2 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknr.atksgyWk 84 +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ eP+dL+ + +++ ++ e ++++kr+ + +r + g Wk SapurV1A.0834s0020.1.p 2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILETNVYEREPQDLEwNeSTALSNGERFYYCKREIND------SReVHGLGWWK 80 589************.88************.89**************9642333356699****998754......3325678**** PP NAM 85 atgkdkevlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 at + k+v++k ++ lvg k+ ++f+ + ++++++kt+W+mhey+l SapurV1A.0834s0020.1.p 81 ATSHVKKVYAKdhrDQPLVGNKRPMTFHrfkdsERNRNNAVKTNWIMHEYSL 132 **********96545555**********8777656778889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.578 | 2 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-31 | 2 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-16 | 3 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILETNVYE REPQDLEWNE STALSNGERF 60 YYCKREINDS REVHGLGWWK ATSHVKKVYA KDHRDQPLVG NKRPMTFHRF KDSERNRNNA 120 VKTNWIMHEY SLESRATEWK LCKIKYKGKP SLQEEIESMI KKQHPSRNDF ETGSSTNVGV 180 EQLDQERSLV PADSAMPLDD HYNQWSNMQQ LPWPLSPPCH PDDLPAPPST SSGHYCVNYQ 240 QEELEPVVHE QPFPNLWSWM N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-18 | 2 | 154 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0834s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 2e-56 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310439.1 | 1e-148 | NAC domain-containing protein 83 | ||||
TrEMBL | B9HH64 | 1e-147 | B9HH64_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02050.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15526 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 6e-20 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0834s0020.1.p |