PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0832s0140.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 98aa MW: 11225.9 Da PI: 6.7815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.4e-05 | 41 | 72 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++l+ + +K + a++L +A+eYI+ L SapurV1A.0832s0140.4.p 41 ERIVALQQLVSPY-----GKTDTASVLMEAMEYIRFL 72 6777888888887.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.252 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-12 | 33 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-9 | 37 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MMENKRSPCS VDHGTLTSLA TKRHKPDFSV STKEQKEKLG ERIVALQQLV SPYGKTDTAS 60 VLMEAMEYIR FLHEQVQYLT CELLWFRLQS LFEDISS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0832s0140.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209043 | 2e-38 | AC209043.1 Populus trichocarpa clone POP055-H02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002857.1 | 2e-49 | PREDICTED: transcription factor bHLH113-like | ||||
Swissprot | Q7XJU2 | 7e-30 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | B9IQU5 | 4e-48 | B9IQU5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s12530.1 | 7e-49 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0832s0140.4.p |
Publications ? help Back to Top | |||
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