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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0832s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 144aa MW: 15778 Da PI: 8.7033 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.1 | 0.00018 | 41 | 72 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++l+ + +K + a++L +A+eYI+ L SapurV1A.0832s0140.2.p 41 ERIVALQQLVSPY-----GKTDTASVLMEAMEYIRFL 72 6777888888887.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.252 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-11 | 33 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-4 | 37 | 77 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 37 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MMENKRSPCS VDHGTLTSLA TKRHKPDFSV STKEQKEKLG ERIVALQQLV SPYGKTDTAS 60 VLMEAMEYIR FLHEQVQVLS APYLQGTPTA QIQELGQHSL ESKGLCLVPI SYTAGIASSN 120 GADLWAPIKS PSPKFKNSFS QFH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0832s0140.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209043 | 2e-57 | AC209043.1 Populus trichocarpa clone POP055-H02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325599.2 | 3e-94 | transcription factor bHLH153 | ||||
Refseq | XP_024447267.1 | 3e-94 | transcription factor bHLH153 | ||||
Swissprot | Q7XJU2 | 6e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | B9IQU5 | 7e-93 | B9IQU5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s12530.1 | 1e-93 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 6e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0832s0140.2.p |
Publications ? help Back to Top | |||
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