PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0832s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 144aa    MW: 15778 Da    PI: 8.7033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0832s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.0001841721854
                            HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +++  L++l+ +      +K + a++L +A+eYI+ L
  SapurV1A.0832s0140.1.p 41 ERIVALQQLVSPY-----GKTDTASVLMEAMEYIRFL 72
                            6777888888887.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2522372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-113385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-43777No hitNo description
Gene3DG3DSA:4.10.280.101.1E-83781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMENKRSPCS VDHGTLTSLA TKRHKPDFSV STKEQKEKLG ERIVALQQLV SPYGKTDTAS  60
VLMEAMEYIR FLHEQVQVLS APYLQGTPTA QIQELGQHSL ESKGLCLVPI SYTAGIASSN  120
GADLWAPIKS PSPKFKNSFS QFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0832s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090432e-57AC209043.1 Populus trichocarpa clone POP055-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325599.23e-94transcription factor bHLH153
RefseqXP_024447267.13e-94transcription factor bHLH153
SwissprotQ7XJU26e-59BH153_ARATH; Transcription factor bHLH153
TrEMBLB9IQU57e-93B9IQU5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s12530.11e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.56e-57bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]