PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0821s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 352aa    MW: 39305.4 Da    PI: 8.0069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0821s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.9e-12192239355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + h ++Er+RR+++ + f  L  ++P +     kK++Ka++Le A++Y+k+Lq
  SapurV1A.0821s0050.2.p 192 QDHIMAERKRREKLSQQFIALSAIVPGL-----KKMDKASVLEDAMKYMKQLQ 239
                             5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-12190243No hitNo description
Gene3DG3DSA:4.10.280.103.7E-16193250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17194256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDIAAWKWLS EMGMDDYRFI HQCHINSLAE FTTQNVANTL PGENLQRSFS SESFSSKPSL  60
MMARNTTITG TSNGSSSETS QASIETPGKQ QKTNSWNSNI ATLHQSPKPP SPISESFSFN  120
TPAPPPTTSS QQFHRNLDRM IKPNDEAASP INMHIQTSIS KAACERSESY APEAKQGIKR  180
NYAMTRTALR VQDHIMAERK RREKLSQQFI ALSAIVPGLK KMDKASVLED AMKYMKQLQE  240
QLKELQDQTR TRTMESVVLL KKSKLSIDGE CSSSDENFDD RSSSLLPEIE ARTTDKDVLI  300
RIHCRNQQGV GMKILSEIEN LHLSVLNSSV LVFGNSTLDI TVIAQIFSEK Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
2198203RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0821s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021822.10.0PREDICTED: transcription factor bHLH18
RefseqXP_011021823.10.0PREDICTED: transcription factor bHLH18
RefseqXP_011021824.10.0PREDICTED: transcription factor bHLH18
TrEMBLA0A3N7GPD80.0A0A3N7GPD8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14480.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-41bHLH family protein