PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0811s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 28439.4 Da PI: 6.4986 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.4 | 4.6e-28 | 6 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aC+ l ++C+++C++apyfp e++++f ++++++ ++v kllk+ +++ d+++sl+yeA+ar+++Pv G++g + lqqq SapurV1A.0811s0030.1.p 6 RCGACRNLDKECKNNCIFAPYFPPEKSQEFSLIQQVYSEKEVEKLLKKHgDPTICGDILESLLYEARARLENPVCGSAGYVYCLQQQ 92 6*********************************************99845566********************************* PP DUF260 87 leqlkaelallkee 100 + ++k +l +k+e SapurV1A.0811s0030.1.p 93 IVEAKIQLCNAKRE 106 ******99988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.891 | 5 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-25 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MTKRPRCGAC RNLDKECKNN CIFAPYFPPE KSQEFSLIQQ VYSEKEVEKL LKKHGDPTIC 60 GDILESLLYE ARARLENPVC GSAGYVYCLQ QQIVEAKIQL CNAKRELASY IGEELAGFPT 120 YIPPIRLQNQ LNPPSSFPSP PILKSSPYAA VKWDLPKSDR KEIDIFTAAA TLHHQGIPTT 180 TETLTSSPYA AVNNTDHRSS QIDESPANYC LITAPVTEGF LQAHHRITYF TSQPLISMPE 240 NDWAIIVFIG YNLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-22 | 7 | 125 | 12 | 129 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-22 | 7 | 125 | 12 | 129 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0811s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039262.1 | 3e-49 | PREDICTED: LOB domain-containing protein 36-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20632 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-24 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0811s0030.1.p |