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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0808s0160.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
M-type_MADS |
| Protein Properties |
Length: 264aa MW: 29019.9 Da PI: 9.0445 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0808s0160.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 68.6 | 5.7e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
i n+sn vtfskRr g++KKA+ELS+LC+aev +i+fs+ k++ +
SapurV1A.0808s0160.1.p 16 IPNDSNLMVTFSKRRSGLFKKASELSTLCGAEVTLIVFSPGKKVFSF 62
88**************************************9999887 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MVRSSRGRQK LEMVKIPNDS NLMVTFSKRR SGLFKKASEL STLCGAEVTL IVFSPGKKVF 60
SFGHPSVDKV VEQYLSGSAP PRPSGAYQLV EAHRNARICD LSMNLTQLQE ELEMEKKRGE 120
ELDNLRKASQ SQYWWDRPIQ ELNLAQLEQF KAALLDLKQN LFRQAQQVLL QNSAPQPFFS 180
PNPGTAGILP FDNRNTGFNS NMAVAPFSSN TTMAPFNTNM TGAPFDANMA GAPFDANMAG 240
APFDANMAGA PYAYTLGYGN GFF*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3kov_A | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 5e-17 | 7 | 92 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
| Publications
? help Back to Top |
- Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization.
Nat Plants, 2015. 1: p. 15184
[PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis.
Elife, 2017.
[PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
Plant Signal Behav, 2017. 12(8): p. e1339000
[PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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