PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0805s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 324aa    MW: 36023.8 Da    PI: 6.2322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0805s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.6e-18218252135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  SapurV1A.0805s0050.1.p 218 CLHCGAEKTPQWRTGPKGPKTLCNACGVRYKSGRL 252
                             99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-7917305IPR016679Transcription factor, GATA, plant
SMARTSM004014.5E-16212262IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.163212248IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-14214275No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14216250IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.28E-13217264No hitNo description
PfamPF003208.1E-16218252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MERPEFFIGG YNDCGTTEFF AEKKSSEQKE DQHFMVEDLL DFPNDDDITA DGFLSDIDSI  60
NATTKNCATT NHSVTTTDSF SSASVDYGRT FADSQFSNEL CFLYDDMAEL EWLSNFVEES  120
FSTDQSLQTN IYILSGSKRP TPESSGSETH PEPLTSNPTF QPETPLPGKA RSKRSRAAPC  180
DWSTRLLHVP SATKMSSKKQ EAERPDPNPD CNTMARRCLH CGAEKTPQWR TGPKGPKTLC  240
NACGVRYKSG RLVPEYRPAA SPTFVSAKHS NSHRKVLELR RQKEMQGAQQ HQFLSQSSIF  300
GASNGGDDFL MRHHSGSNHG HMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0805s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046757.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826329e-75GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2C9W2821e-132A0A2C9W282_MANES; GATA transcription factor
STRINGcassava4.1_034054m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-77GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]