PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0805s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92231.5 Da    PI: 6.3802
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0805s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-181876357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0805s0030.1.p 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                            5679*****************************************************97 PP
2START173.41.4e-541623702205
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g  +ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++
  SapurV1A.0805s0030.1.p 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSNGIVAISHGCTGVGARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTA 247
                             789*******************************************************.8888888888****************99 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+l++p+++g+s +++v+h
  SapurV1A.0805s0030.1.p 248 ngGTIELLYMQLYAPTTLAPgRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDH 334
                             99*************************************************9988899***************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                             +dl+ ++++++lr+l++s+++ ++kt++a+l+++++
  SapurV1A.0805s0030.1.p 335 MDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQ 370
                             ********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6131377IPR001356Homeobox domain
SMARTSM003891.2E-151581IPR001356Homeobox domain
SuperFamilySSF466891.37E-161781IPR009057Homeodomain-like
CDDcd000861.31E-161878No hitNo description
PfamPF000465.8E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-182076IPR009057Homeodomain-like
CDDcd146861.23E-670109No hitNo description
PROSITE profilePS5084825.535152367IPR002913START domain
CDDcd088755.77E-77156372No hitNo description
SMARTSM002348.1E-38161371IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-22161368IPR023393START-like domain
SuperFamilySSF559615.36E-36161373No hitNo description
PfamPF018524.4E-52162370IPR002913START domain
PfamPF086702.0E-52695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAMSCKDGKN LINMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
HTQNTTLASK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSNGIVAIS HGCTGVGARA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPGRD FWLLRYTSVL EDGSLVVCER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLVR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT  360
TMAALRQLRQ IAQEASQSNV TNWGRRPAAL RALSQRLSRG FNEALNGFSD EGWSMIGNDG  420
MDDVTILVNS SPDKLMGLNL PFSNGFPAVS SAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNIDAYA AAAVKVGPCS LQGSRVGNFG GQVILPLAHT IEQEEFLEVI KLEGVCHSPE  540
DAIMPRDVFL LQLCCGMDEN AVGTCAELIF APIDATFADE APLLPSGFRI IPLDSGKEAS  600
SPNRTLDLAS ALEVGAGNRA SSGFSANSGC TRSVMTIAFE FAFESNMQEH VASMARQYIR  660
SIISSVQRVA LALSPSHLGS QAGLRSPLGT PEAQTLAHWI CQSYRGYLGV ELLKSSSEGS  720
ESILKTLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ GFTCLQGGIC MSSMGRPVSY ERAVSWKVLN EEENAHCICF MFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0805s0030.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5347160.0KF534716.1 Populus alba x Populus glandulosa HD-ZIPIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464085.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2I4KKW30.0A0A2I4KKW3_POPTR; HD-ZIP family protein
STRINGPOPTR_0001s18930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]