PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0802s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YC | ||||||||
Protein Properties | Length: 179aa MW: 19753.2 Da PI: 6.6934 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.7 | 7.2e-15 | 41 | 128 | 11 | 97 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 +++t + e+P rik+i+k d+d++++ a+a l+s + elf+ l+ +s a e+kr+ +k i aa +r + + dfl+d SapurV1A.0802s0250.1.p 41 NTETTTTRPEFPTGRIKRIMKLDKDINKVNADALFLVSSSTELFLRFLAEKSAEVAIEKKRKIVKLDHIRAAAKRHHpTSDFLLDSL 127 4445556789************************************************************9999875389*****98 PP NF-YC 97 p 97 p SapurV1A.0802s0250.1.p 128 P 128 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.01E-17 | 44 | 128 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-18 | 45 | 112 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-18 | 50 | 112 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGESEENNTE TKTNIQTLHP SNFPPPQSIS HSPMGESEEK NTETTTTRPE FPTGRIKRIM 60 KLDKDINKVN ADALFLVSSS TELFLRFLAE KSAEVAIEKK RKIVKLDHIR AAAKRHHPTS 120 DFLLDSLPLP AESSEKPASD NTSGRTVTDK PAPAGTRRID QFFSKAASEE LPVLINES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0802s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297836.2 | 2e-85 | nuclear transcription factor Y subunit C-5 | ||||
TrEMBL | B9GMJ4 | 5e-84 | B9GMJ4_POPTR; NF-YC family protein | ||||
STRING | POPTR_0001s13970.1 | 9e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-46 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0802s0250.1.p |