PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0801s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 387aa    MW: 42212.4 Da    PI: 8.1061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0801s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.6e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  SapurV1A.0801s0120.1.p 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding48.12.7e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++  +E+  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  SapurV1A.0801s0120.1.p  67 RGKFNLQEEHSIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                             899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24563IPR009057Homeodomain-like
PROSITE profilePS5129424.319965IPR017930Myb domain
SuperFamilySSF466896.36E-3011108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001677.06E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2464116IPR009057Homeodomain-like
PROSITE profilePS5129419.27766116IPR017930Myb domain
SMARTSM007176.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVKSQCREKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF NLQEEHSIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLDKMG  120
IDPVTHKPKA DSFGSGSGHS KGAANLSHMA QWESARLEAE ARLVRESKLI VPNPPKNLLG  180
SAASAHLVSN KGSTASPAAR PQCLDVLKAW QGVVISMFSV GRSTDSLESP TSTLNFSENA  240
LAIPLNGAHK HSTTRIAFAT DNAACIGGTT ASEFDRGNRL GCIEKLEETA RVKRDLDSSM  300
GIHDIIPYAI DHNAWFVDSP ANIENAPGGD IIGLSEILGS NSQEHNPSCS GENINESYDG  360
NLEENRDYWN SLLNLVGASP TGSAVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0801s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311313.20.0transcription factor MYB106
SwissprotQ9LE631e-105MY106_ARATH; Transcription factor MYB106
TrEMBLB9HI920.0B9HI92_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-107myb domain protein 106