PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0790s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 646aa    MW: 73553.6 Da    PI: 6.0948
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0790s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07538585246
                             SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                             +rWTteE+ +++d+v++ +       W+  +++++ ++t+++++s++++
  SapurV1A.0790s0110.1.p 538 LRWTTEEEMRFKDVVRLNPLSagkcFWDNKSKYFP-RKTREELISYYFN 585
                             79****************9889999**********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010146.9E-853143No hitNo description
PROSITE profilePS5101116.4556147IPR001606ARID DNA-binding domain
SMARTSM005012.2E-857148IPR001606ARID DNA-binding domain
SuperFamilySSF467743.66E-1478151IPR001606ARID DNA-binding domain
PfamPF013882.6E-879143IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.605.4E-1280155IPR001606ARID DNA-binding domain
CDDcd001675.08E-5539585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MAWLILTNGF ALDCPDDVIY RYRGTGGCPD ISMKDEIKEC IVVDSDEDGY DYDCEDRVVC  60
LFDEVVSIFL NEAADGGCIR PIPALLGDGQ SLDLFKLYWV VRKRGGFDLV NGFWNFVAKE  120
LGLDLLFSPS VKLIYMKYLY ELEKFMKICS DEKLRKELHQ CDGNLSFSLL ELEMQFRSLL  180
SLIGDRKQGD GKFASLGYKV NGRYIETAIG KRKEVFLDTK DVHQIPNYVG NRNGDDDDEK  240
SQGEKKNYSN CSDDDVVILD PSIAKKEFNS RKRKQEPLTR MLNWLIQIAK CPDDPFIGVI  300
HRGDELWSQA IRAREALFQR QYVNPNIEQS SAQVCNMNLQ SNQKMCPSMF EDVSFPSEQS  360
AERSRCSKRP PAPEKPQLCY CCNSCSAHQS KSASLLKTKC ENACKEQEHA LKVQELVIGD  420
LSSKHTTLSG SEDKHVRRHV AVGPLFQAEV PEWTGMVSES ASKWLGTRFW PSKYENHNVP  480
VAMDPIGKGG ISLCGCQLPG SVGCARFHTA EKRMKLKLEL GPLFYHWRFD HMGEEVSLRW  540
TTEEEMRFKD VVRLNPLSAG KCFWDNKSKY FPRKTREELI SYYFNAYLVR CRSYQNRVTP  600
KYTDSDDDDE TKFGSLSDAY GHEALTVPGA TMLICSENKQ CTDFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0790s0110.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304507.30.0AT-rich interactive domain-containing protein 2
TrEMBLA0A2K2B6980.0A0A2K2B698_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF399678