PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0778s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 308aa    MW: 34458.4 Da    PI: 8.3618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0778s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-092873346
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                             WT+eE +++ +a +++ ++   +W ++a++++ g+t  +++  ++ 
  SapurV1A.0778s0020.1.p 28 EWTPEENKQFENALALYDKDtpdRWQKVAAMIP-GKTVGDVIKQYRE 73
                            6********************************.******9999986 PP
2Myb_DNA-binding42.31.8e-13135179347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ +++ +  ++G+g+W+ I+r   ++Rt+ q+ s+ qky
  SapurV1A.0778s0020.1.p 135 PWTEEEHRQFLLGLLKYGKGDWRNISRNYVTTRTPTQVASHAQKY 179
                             8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-52274IPR009057Homeodomain-like
PROSITE profilePS5129310.7052479IPR017884SANT domain
SMARTSM007173.1E-112577IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-122781IPR009057Homeodomain-like
PfamPF002491.8E-82873IPR001005SANT/Myb domain
CDDcd001675.85E-92874No hitNo description
Gene3DG3DSA:1.10.10.604.9E-11126181IPR009057Homeodomain-like
PROSITE profilePS5129417.827128184IPR017930Myb domain
SuperFamilySSF466892.94E-17129185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-17131183IPR006447Myb domain, plants
SMARTSM007171.6E-11132182IPR001005SANT/Myb domain
CDDcd001674.75E-10135180No hitNo description
PfamPF002494.5E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNQGIGILSQ ASYVQNSNWL FQESRGTEWT PEENKQFENA LALYDKDTPD RWQKVAAMIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YNSDSFTLEW ASNHGYEGLK QFYSSGGKRG  120
TATRPSEQER KKGVPWTEEE HRQFLLGLLK YGKGDWRNIS RNYVTTRTPT QVASHAQKYF  180
IRQNNGGKDK RRSSIHDITT VNLPDARSPS PENRKPSSPN NSTTTDQFQA APITAGMVKG  240
LFDWKPQNEG AATVFNPANG NLLMAPFCGI SPYGSKLQEQ ILLGGTLPGY QFGPYNLIFQ  300
MQSMQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-162693875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0778s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322964.20.0transcription factor DIVARICATA
SwissprotQ8S9H71e-114DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2I4KKD50.0A0A2I4KKD5_POPTR; MYB family protein
STRINGPOPTR_0016s11980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-127MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]