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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0768s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29719.2 Da PI: 4.7511 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.3 | 8.3e-42 | 4 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk 79 +ppGfrF Pt+eelv++yL++k+e+++ +++ i+ +diy++ Pw+Lp+ ++++++ew+fF++ ++ +a+g r++r t+ SapurV1A.0768s0010.1.p 4 MPPGFRFYPTEEELVSFYLHNKLEARRedllRAMDRLIPVLDIYRFSPWELPRfsgdLCHGDTEEWFFFIRMQEGEARGGRPRRLTS 90 79***********************997774444446999************546764455778*********************** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg+ +v+s+ +++ +g k+t+vfy+grap+g+kt+W m+e+++ SapurV1A.0768s0010.1.p 91 NGYWKATGSPCPVYSSnSNRCIGEKRTMVFYEGRAPNGRKTEWKMNEFKA 140 ***************855666***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-44 | 3 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.603 | 4 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-21 | 5 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDMMPPGFRF YPTEEELVSF YLHNKLEARR EDLLRAMDRL IPVLDIYRFS PWELPRFSGD 60 LCHGDTEEWF FFIRMQEGEA RGGRPRRLTS NGYWKATGSP CPVYSSNSNR CIGEKRTMVF 120 YEGRAPNGRK TEWKMNEFKA MEEVEEEEEA TLSNGGHTRL RQEFSLCRVY KNKFVRAFDR 180 RPIGVEMGEM RAQATPFNEV TSSHQNPSTV EIACSDDISS LGDHGQPFQT GEASNMASMD 240 IDNEPIWDWE QFDWC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-29 | 4 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-29 | 4 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-29 | 4 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-29 | 4 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-29 | 4 | 173 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-29 | 4 | 173 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-29 | 4 | 173 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0768s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216672 | 1e-106 | AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004197.1 | 1e-155 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | B9HBX6 | 1e-152 | B9HBX6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22580.1 | 1e-152 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-73 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0768s0010.1.p |