PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0767s0100.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 730aa MW: 84021.1 Da PI: 8.2227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0767s0100.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.1	5.5e-27	87	189	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgk 75 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ +r+ ++t+Cka+++vk++ dgk SapurV1A.0767s0100.4.p 87 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprsrqtkqdPENGTGRRSCSKTDCKASMHVKRRPDGK 173 5*****************************************999999998776555444555999*************** PP FAR1 76 wevtkleleHnHelap 91 w+++++++eHnHel p SapurV1A.0767s0100.4.p 174 WVIHSFVKEHNHELLP 189 ***********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-25	87	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-31	287	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.322	567	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-7	578	605	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.0E-4	579	602	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MDINLRLPSG DHDKEGEEPN GVNNMLSEAK LHNGDVEIGN VVDVAEQVLS IEGGDVNSPT 60 TSMGFKEDIK LEPLSGMEFE SHGAAYSFYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA 120 CSRYGTKREY DKSFNRPRSR QTKQDPENGT GRRSCSKTDC KASMHVKRRP DGKWVIHSFV 180 KEHNHELLPA QAVSEQTRKM YAAMAQQFAE YKNVVGLKND PKNPFDKGWN LGLEAGETKI 240 LLDFFTRMQN MNSNFFYAVD LGEDQRLKNL IWADAKSRHD YSNFSDVVNF DTTYVRNKYK 300 MPLALFVGVN QHYQFMLLGC ALVSDESAAT YSWLMQTWLR AMGGQTPKVI ITDQDKVLKQ 360 VISEVFPNAH HCFCLWNVLG KVSENLGNVI KQNRNFMAKF DKCIFRSWTE NEFGKRWLKI 420 LDRFELRENE WMQSLYEDRE QWVPIYMRGA FLAGMSTALR SESINSYFDK YVHKKTTVQE 480 FVRQYESILQ DRYEEEAKAD SDTWNKQPAL KSPSPLEKSV SGMYTHAVFK KFQVEVLGVV 540 ACHPKMESQD ETSVSFRVQD LEKEQDFTVL WNQMRLEVSC ICRLYEYKGY LCRHALVVLQ 600 MCQQSAIPSQ YILKRWTKDA KSRHLVGEEC EQVQSRVQRY NDLCQRALKL SEEASLSQES 660 YSMAFRALEE AFGNCIGMNN SNKNLVEAGT SATHGLLCIE DDNQNRSVTK TIKKKNQTKK 720 RKVGGQKQI*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MDINLRLPSG DHDKEGEEPN GVNNMLSEAK LHNGDVEIGN VVDVAEQVLS IEGGDVNSPT  60
TSMGFKEDIK LEPLSGMEFE SHGAAYSFYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA  120
CSRYGTKREY DKSFNRPRSR QTKQDPENGT GRRSCSKTDC KASMHVKRRP DGKWVIHSFV  180
KEHNHELLPA QAVSEQTRKM YAAMAQQFAE YKNVVGLKND PKNPFDKGWN LGLEAGETKI  240
LLDFFTRMQN MNSNFFYAVD LGEDQRLKNL IWADAKSRHD YSNFSDVVNF DTTYVRNKYK  300
MPLALFVGVN QHYQFMLLGC ALVSDESAAT YSWLMQTWLR AMGGQTPKVI ITDQDKVLKQ  360
VISEVFPNAH HCFCLWNVLG KVSENLGNVI KQNRNFMAKF DKCIFRSWTE NEFGKRWLKI  420
LDRFELRENE WMQSLYEDRE QWVPIYMRGA FLAGMSTALR SESINSYFDK YVHKKTTVQE  480
FVRQYESILQ DRYEEEAKAD SDTWNKQPAL KSPSPLEKSV SGMYTHAVFK KFQVEVLGVV  540
ACHPKMESQD ETSVSFRVQD LEKEQDFTVL WNQMRLEVSC ICRLYEYKGY LCRHALVVLQ  600
MCQQSAIPSQ YILKRWTKDA KSRHLVGEEC EQVQSRVQRY NDLCQRALKL SEEASLSQES  660
YSMAFRALEE AFGNCIGMNN SNKNLVEAGT SATHGLLCIE DDNQNRSVTK TIKKKNQTKK  720
RKVGGQKQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0767s0100.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024459461.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2K1ZVK4	0.0	A0A2K1ZVK4_POPTR; Uncharacterized protein
STRING	POPTR_0006s02150.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0767s0100.4.p

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]