PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0767s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 839aa MW: 96649.3 Da PI: 7.1301

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0767s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.1	2.9e-28	73	160	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r++++++t+Cka+++vk++ dgkw ++++++eHnH SapurV1A.0767s0090.1.p 73 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---NSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKEHNH 156 5**************************************999888...888999***************************** PP FAR1 88 elap 91 el p SapurV1A.0767s0090.1.p 157 ELLP 160 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-25	73	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-24	281	373	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.248	560	596	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-4	570	594	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	571	598	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MTERNHKIID DMIDLQDNVP ADDVVGGNIV DVVHSRDVAV VDSPKRAVVM FEGDVNYELC 60 DGIEFGSHEE AYSFYQEYAK SMGFTTSIKN SRRSKKSKEF IDAKFACSRY GVTPESDSGN 120 SRRSTVKKTD CKASMHVKRR PDGKWIIHEF VKEHNHELLP ALAYHFRIHR NVKLAEKNNI 180 DILHAVSERT RKMYVEMSRQ SGGYQNFGFV KSELNMQFEK GRHLALDEGD AQVVLEYFKH 240 VKKENANFFY AIDLNEDQRL RNLFWVDSKS REDYISFNDA VCFETFYVKY HEKLPFAPFV 300 GVNHHSQPIL LGCAFIADES RSSFVWLMKT WLRAMGGQAP KVIVTDVDKT LKAAIEEAFP 360 NTRHCFSLWH ILERLPETLS HVIKRHEKFL PKFHKCIFKS WTDDRFDMRW WKMVTQFELQ 420 DDEWIQSLYE DRKKWVPTYL GDTFLAGTSA AQRSESMSAF FDKYIHRKIT MKEFMKQYGT 480 ILQNRYEDES VADFDTSHKQ PALKSPSPWE KQMSLVYTHA IFKKFQVEVL GVVGCHPKRE 540 SEDGTLVTFR VQDCEKDEQF LVTWNQTKSE VSCFCHLFEY KGFLCRHALI VLQICGLSTI 600 PPHYILKRWT KDAKSRQPLA VGTERAQTRA QRYNDLCKLA IEMSEEGSLS EESYNIVLHT 660 LVEALKNCVN VNNCNNSVAE SSTFTLTHRE AEEENQGSLV TKSSKKKNPV RKRKVQSDPD 720 VMLVEAPENL QQMENLSSEG INLSGYYGTQ QNVQGLVQLN LMEPPHDGYY VNQQSMQGLG 780 QLNSIAPSHD GFFGNQQSMH GLGQFDFRPP SGFSYSMQLQ DDTHLRSSHM HGGASRNA*

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MTERNHKIID DMIDLQDNVP ADDVVGGNIV DVVHSRDVAV VDSPKRAVVM FEGDVNYELC  60
DGIEFGSHEE AYSFYQEYAK SMGFTTSIKN SRRSKKSKEF IDAKFACSRY GVTPESDSGN  120
SRRSTVKKTD CKASMHVKRR PDGKWIIHEF VKEHNHELLP ALAYHFRIHR NVKLAEKNNI  180
DILHAVSERT RKMYVEMSRQ SGGYQNFGFV KSELNMQFEK GRHLALDEGD AQVVLEYFKH  240
VKKENANFFY AIDLNEDQRL RNLFWVDSKS REDYISFNDA VCFETFYVKY HEKLPFAPFV  300
GVNHHSQPIL LGCAFIADES RSSFVWLMKT WLRAMGGQAP KVIVTDVDKT LKAAIEEAFP  360
NTRHCFSLWH ILERLPETLS HVIKRHEKFL PKFHKCIFKS WTDDRFDMRW WKMVTQFELQ  420
DDEWIQSLYE DRKKWVPTYL GDTFLAGTSA AQRSESMSAF FDKYIHRKIT MKEFMKQYGT  480
ILQNRYEDES VADFDTSHKQ PALKSPSPWE KQMSLVYTHA IFKKFQVEVL GVVGCHPKRE  540
SEDGTLVTFR VQDCEKDEQF LVTWNQTKSE VSCFCHLFEY KGFLCRHALI VLQICGLSTI  600
PPHYILKRWT KDAKSRQPLA VGTERAQTRA QRYNDLCKLA IEMSEEGSLS EESYNIVLHT  660
LVEALKNCVN VNNCNNSVAE SSTFTLTHRE AEEENQGSLV TKSSKKKNPV RKRKVQSDPD  720
VMLVEAPENL QQMENLSSEG INLSGYYGTQ QNVQGLVQLN LMEPPHDGYY VNQQSMQGLG  780
QLNSIAPSHD GFFGNQQSMH GLGQFDFRPP SGFSYSMQLQ DDTHLRSSHM HGGASRNA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0767s0090.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024459852.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2K1ZVH1	0.0	A0A2K1ZVH1_POPTR; Uncharacterized protein
STRING	POPTR_0006s02140.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0767s0090.1.p

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]