PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0764s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 541aa    MW: 58839.4 Da    PI: 7.3164
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0764s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14169228155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  SapurV1A.0764s0140.1.p 169 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 228
                             57*******************666664477446**********99*************98 PP
2AP247.15.7e-15271322155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0764s0140.1.p 271 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 322
                             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.75E-22169238No hitNo description
PfamPF008479.6E-12169228IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-17169238IPR016177DNA-binding domain
SMARTSM003803.8E-29170242IPR001471AP2/ERF domain
PROSITE profilePS5103218.927170236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15170237IPR001471AP2/ERF domain
PRINTSPR003672.3E-6171182IPR001471AP2/ERF domain
PfamPF008477.1E-10271322IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18271332IPR016177DNA-binding domain
CDDcd000185.42E-25271332No hitNo description
SMARTSM003801.5E-33272336IPR001471AP2/ERF domain
PROSITE profilePS5103219.045272330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18272331IPR001471AP2/ERF domain
PRINTSPR003672.3E-6312332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDSTSHQNWL GFSLSNHHHM NNISIPSSSD SSHLCLYEAF STTPTTTTSA QEDNAVAAGR  60
PADISLFTTS GPKLEDFLGG CTTTQPPQQP LGGLFSTETP GTTTPATVSD NSSSEIYDSE  120
LKTIAASLFR GYSSTDHQQT GSSQKHQQLL LQPEHAPKKT ADTFGQRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEDKAARAYD LAALKYWGPT TTTNFPVSNY  240
EKELEGMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  300
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA NSNLPIGGIS GKSKNSSESV  360
SDSKSIDLSR SDDRDLSSAS SVTFASQPTT STLSFSMPIK QDPSDYWTNI LGYQNTTMNN  420
TKNSSSIVAP STLLQSSTGF PAFQGPTAFS MDFNTHSSVN ESNHSGILFN GGYIEQQNGG  480
DGISTSSSSS SIPFATPIAL HSNGSSYEGN SSYGTWISQS LFQSAKPNLS AYQTPIFGME  540
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0764s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445325.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-167AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2K1WYA80.0A0A2K1WYA8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s09900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-147AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]