PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0755s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24444.5 Da PI: 4.1661 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85 | 1.4e-26 | 13 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 l pG+rF Pt++el+v+yLk+k+ g++l++ +vi+++d+y ++P +Lp +k+ e +ew+fFs+r+k + + gy SapurV1A.0755s0140.1.p 13 LVPGYRFIPTNDELIVYYLKRKIMGQQLPC-DVIPTIDVYASNPDKLPlDDLKGgEANEWFFFSTRSKDD-----DVIVLDGGYYAI 93 579***************************.99***************6566662556*******98864.....456788999985 PP NAM 86 tgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +g++vg ktL fykg++p+g++t+W+++e r+ SapurV1A.0755s0140.1.p 94 DPEgAGPITW-EGKTVGYVKTLNFYKGSSPDGKETEWMVEELRV 136 4442688888.999**************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-30 | 7 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.571 | 13 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-15 | 15 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MASGGQALNV PFLVPGYRFI PTNDELIVYY LKRKIMGQQL PCDVIPTIDV YASNPDKLPL 60 DDLKGGEANE WFFFSTRSKD DDVIVLDGGY YAIDPEGAGP ITWEGKTVGY VKTLNFYKGS 120 SPDGKETEWM VEELRVNLEF VPVDNDDRST QEKASVSGST SRLTMLYVVN VQIENLVACR 180 VSRVQPETEW YEYFDEEIEK EAKRGKFEIP ASLLEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-21 | 8 | 136 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0755s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209184 | 9e-95 | AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318469.1 | 2e-96 | NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_024438638.1 | 2e-96 | NAC domain-containing protein 86 isoform X2 | ||||
TrEMBL | B9I237 | 2e-96 | B9I237_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03100.1 | 3e-97 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14452 | 7 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 2e-25 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0755s0140.1.p |