PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0754s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 294aa    MW: 33374.4 Da    PI: 7.134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0754s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-171764148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEd++l + v+++G g+W++++   g+ R +k+c++rw +yl
  SapurV1A.0754s0180.1.p 17 KGLWSPEEDQRLRNHVHKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                            678*******************************************97 PP
2Myb_DNA-binding54.72.3e-1770115148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg ++++E+e ++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
  SapurV1A.0754s0180.1.p  70 RGLFSEQEEETILALHRTLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 115
                             7889******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-221167IPR009057Homeodomain-like
PROSITE profilePS5129419.4581264IPR017930Myb domain
SuperFamilySSF466893.18E-2914111IPR009057Homeodomain-like
SMARTSM007173.3E-121666IPR001005SANT/Myb domain
PfamPF002492.8E-151764IPR001005SANT/Myb domain
CDDcd001674.59E-112064No hitNo description
PROSITE profilePS5129426.29765119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2568118IPR009057Homeodomain-like
SMARTSM007173.1E-1669117IPR001005SANT/Myb domain
PfamPF002497.8E-1670115IPR001005SANT/Myb domain
CDDcd001679.19E-1273115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGCNPSDKPK LKPKHRKGLW SPEEDQRLRN HVHKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GLFSEQEEET ILALHRTLGN KWSQIAQHLP GRTDNEIKNH WHSYLKKKFF  120
KDEGTESLKR TQSDSSNSDI MELSPSPKKI KMQASSFDSS MSMEKPSAEI NRPVPQMLES  180
PKEPKGSSLL PKIIFAEWLS LDSFASFGEP MDSKSTFDHN TSFQDNFMHD YLLDERAFCG  240
GYHNSLSDGS SGDIFSSEFK FESQSPGNEF DFCSGQDLCS DFNLSNISDV MYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26111911128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ESLKRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0754s0180.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321912.30.0LOW QUALITY PROTEIN: transcription factor LAF1
SwissprotQ9M0K42e-57LAF1_ARATH; Transcription factor LAF1
TrEMBLB9I4991e-161B9I499_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-60myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]