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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0739s0060.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GATA | ||||||||
Protein Properties | Length: 151aa MW: 16164.3 Da PI: 9.9631 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1e-18 | 30 | 63 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk+ SapurV1A.0739s0060.3.p 30 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKK 63 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.532 | 24 | 60 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-12 | 24 | 63 | No hit | No description |
SMART | SM00401 | 5.0E-13 | 24 | 87 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.8E-16 | 28 | 64 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.11E-12 | 29 | 64 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 30 | 55 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-16 | 30 | 64 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MLDPYEKGSE SEEMSSSKSL ETENTQKKTC ADCGTSKTPL WRGGPAGPKS LCNACGIRSR 60 KKKRDVLGLS KGGGAAANDK RAKKGSSNNG SGDYNNDYKQ LGDGLKQRLL ALGRDVLVQR 120 STVEKRRRML GEEEQAAVLL MALSYGSVYA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0739s0060.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378027.1 | 7e-70 | GATA transcription factor 16 isoform X1 | ||||
Swissprot | Q8LG10 | 1e-45 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | U5G0B5 | 2e-68 | U5G0B5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s00360.1 | 5e-67 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 8e-43 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0739s0060.3.p |
Publications ? help Back to Top | |||
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