PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0739s0060.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 152aa    MW: 16292.4 Da    PI: 9.9631
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0739s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-183164134
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                            C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk+
  SapurV1A.0739s0060.2.p 31 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKK 64
                            ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-122564No hitNo description
SMARTSM004015.0E-132588IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5322561IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.9E-162965IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.88E-123065No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003201.2E-163165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MLDPYEKQGS ESEEMSSSKS LETENTQKKT CADCGTSKTP LWRGGPAGPK SLCNACGIRS  60
RKKKRDVLGL SKGGGAAAND KRAKKGSSNN GSGDYNNDYK QLGDGLKQRL LALGRDVLVQ  120
RSTVEKRRRM LGEEEQAAVL LMALSYGSVY A*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0739s0060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378027.13e-70GATA transcription factor 16 isoform X1
SwissprotQ9FJ108e-45GAT16_ARATH; GATA transcription factor 16
TrEMBLU5G0B56e-69U5G0B5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s00360.16e-67(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.18e-43GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]