PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0731s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28188.9 Da    PI: 8.3111
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0731s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  SapurV1A.0731s0080.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                            79***********************************************96 PP
2K-box93.14.7e-31821739100
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                             + +++ es+++e+ ++k++ e Lqr+qR+llGedL++L+ k+L+qLe+qLe+sl+++Rs+K++++l+q+++lq+ke+ l e+n+aL+
  SapurV1A.0731s0080.1.p  82 KPAKELESSYREYLRVKAKFEALQRTQRNLLGEDLGPLNTKDLEQLEHQLESSLNQVRSTKTQYMLDQLSDLQNKEHLLLEANRALT 168
                             5678899*******************************************************************************9 PP

                   K-box  96 kklee 100
                              kl+e
  SapurV1A.0731s0080.1.p 169 IKLDE 173
                             99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-33275IPR002100Transcription factor, MADS-box
CDDcd002652.37E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.18487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QKCSYGVEEV NKPAKELESS YREYLRVKAK FEALQRTQRN LLGEDLGPLN  120
TKDLEQLEHQ LESSLNQVRS TKTQYMLDQL SDLQNKEHLL LEANRALTIK LDEISARNNL  180
RPSWEGDDQQ NMSYGHQHAQ SQGLFQHLEC NPTLQIGYNP VGSDQMSGTT HSAQQVHGFI  240
PGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-32751711101Developmental protein SEPALLATA 3
4ox0_B1e-32751711101Developmental protein SEPALLATA 3
4ox0_C1e-32751711101Developmental protein SEPALLATA 3
4ox0_D1e-32751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0731s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7893980.0DQ789398.1 Populus tomentosa MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306051.21e-175developmental protein SEPALLATA 2
RefseqXP_006384290.11e-175developmental protein SEPALLATA 2
RefseqXP_011008140.11e-175PREDICTED: developmental protein SEPALLATA 2-like
RefseqXP_011008141.11e-175PREDICTED: developmental protein SEPALLATA 2-like
SwissprotQ8LLR21e-144MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLB9H0G01e-174B9H0G0_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_14.2221e-154(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-126MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]