PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0725s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 83aa    MW: 9331.4 Da    PI: 9.1321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0725s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-101055144
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            r +WT+   +++ +a +++ ++   +W+ +a+ +g g++++++  ++
  SapurV1A.0725s0050.1.p 10 RSSWTPMQNKRFEKALALYDKDtpdRWHNVAKAVG-GKSAEEVERHY 55
                            789********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.785863IPR017884SANT domain
SMARTSM007171.2E-8961IPR001005SANT/Myb domain
PfamPF002491.3E-71055IPR001005SANT/Myb domain
SuperFamilySSF466893.43E-121266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-51265IPR009057Homeodomain-like
CDDcd001672.41E-61355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASCSLTSSR SSWTPMQNKR FEKALALYDK DTPDRWHNVA KAVGGKSAEE VERHYEILIK  60
DVREIESGRV PFPNYRSSGN SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31681179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0725s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383186.14e-49protein RADIALIS-like 3
SwissprotQ6NNN08e-35RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9MXN39e-48B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.11e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-34RAD-like 6