PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0720s0210.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YC

Protein Properties

Length: 293aa MW: 31814 Da PI: 4.7511

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0720s0210.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.9	8.4e-17	6	80	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv + SapurV1A.0720s0210.3.p 6 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSK 80 8**********************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.0E-17	2	65	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.4E-23	6	79	IPR009072	Histone-fold
SuperFamily	SSF47113	1.92E-19	12	82	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MFIDKARIKK IMQADEDVGK IALAVPVLVS KALELFLQDL CDRTYEITLQ RGAKTMNSLH 60 LKHCVQSYNV FDFLREIVSK VPDYSHGHSD AAADHRPLQK RKPTVDECND SDEELKRSRM 120 HETSHAGSSG RGRGRGRGRG RGRGARNIER ETSSRDLDPE SSTTVLQSVK NNSNSGVVMD 180 IGSESKEPVK ENNIAGDAAS QAERNFDLNT EVNDSEDAKA AAALAAASTA AAPAAASTAA 240 PSLSAEPAAE TNHEEYPGWS LSEMDKMAID PLQLAQLSTR LDEEEEDYDE EG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-19	6	66	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	142	RGRGRGRGRGR
2	134	143	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0720s0210.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034688.1	1e-152	PREDICTED: dr1-associated corepressor homolog
TrEMBL	A0A2I4KK44	1e-150	A0A2I4KK44_POPTR; NF-YC family protein
STRING	POPTR_0001s07050.1	1e-145	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-65	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	SapurV1A.0720s0210.3.p