PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0720s0210.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YC | ||||||||
Protein Properties | Length: 293aa MW: 31814 Da PI: 4.7511 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 52.9 | 8.4e-17 | 6 | 80 | 24 | 98 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv + SapurV1A.0720s0210.2.p 6 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSK 80 8**********************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.0E-17 | 2 | 65 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.4E-23 | 6 | 79 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.92E-19 | 12 | 82 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MFIDKARIKK IMQADEDVGK IALAVPVLVS KALELFLQDL CDRTYEITLQ RGAKTMNSLH 60 LKHCVQSYNV FDFLREIVSK VPDYSHGHSD AAADHRPLQK RKPTVDECND SDEELKRSRM 120 HETSHAGSSG RGRGRGRGRG RGRGARNIER ETSSRDLDPE SSTTVLQSVK NNSNSGVVMD 180 IGSESKEPVK ENNIAGDAAS QAERNFDLNT EVNDSEDAKA AAALAAASTA AAPAAASTAA 240 PSLSAEPAAE TNHEEYPGWS LSEMDKMAID PLQLAQLSTR LDEEEEDYDE EG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 9e-19 | 6 | 66 | 15 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 142 | RGRGRGRGRGR |
2 | 134 | 143 | RGRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0720s0210.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011034688.1 | 1e-152 | PREDICTED: dr1-associated corepressor homolog | ||||
TrEMBL | A0A2I4KK44 | 1e-150 | A0A2I4KK44_POPTR; NF-YC family protein | ||||
STRING | POPTR_0001s07050.1 | 1e-145 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-65 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0720s0210.2.p |