PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0719s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 271aa    MW: 30448.1 Da    PI: 6.1729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0719s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-08163210455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  SapurV1A.0719s0010.1.p 163 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 210
                             8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-16157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.79E-10157214No hitNo description
PROSITE profilePS5088815.097159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-16159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADFTADLQS FNPPFPFLDI DASMVAINHF TDVNQAVQLD NPIVNNFHSF TPFTCDNFFS  60
HQAPEFPGSL AENVLPGSYH QNVMPVSQTL ISPGKESEFQ ESKKRRAMDV SESSCMNSSP  120
QVSESGSKKR KSSRRGKRVK NNEEEETKEV VHVRARRGQA TDSHSLAERV RRGKINERLR  180
CLQDIVPGCY KTMGMAVMLD EIINYVQSLQ NQVEFLSMKL TEASTFYDFN AETDAIETMQ  240
RAKVEEAKEL QRAAREGSGV VAQFHSSWPI *
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0719s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374179.21e-169transcription factor BEE 3
SwissprotQ8GWK78e-75BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2K1XHY71e-168A0A2K1XHY7_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05210.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-65BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]